Cherry Cheesecake Cupcakes

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Cherry Cheesecake Cupcakes: Little Loves for Busy Days

There’s something comforting about a dessert that feels special without demanding your whole afternoon — enter Cherry Cheesecake Cupcakes. If you want a creamy, crowd-pleasing treat that’s perfect for potlucks, after-school snacks, or a cozy night in, this recipe hits the sweet spot. As someone who juggles life in the kitchen with two left shoes and a big appetite for flavor, I promise these are straightforward enough for a weeknight and pretty enough for guests.

If you’re the kind who adores layered desserts, you might also enjoy my take on a rich, no-bake option I often make for gatherings — here’s a shout to my Cherry Cheesecake Lush for when you want something that sits pretty on the table without a hot oven: my Cherry Cheesecake Lush.

Why You’ll Love These Cherry Cheesecake Cupcakes

  • They’re perfectly portioned cheesecake treats — no slicing drama.
  • They combine the familiar comfort of graham cracker crust with creamy cheesecake and a bright cherry topping.
  • They’re forgiving: a few simple tips make cracking and grainy texture rare.
  • They’re flexible: swap toppings, use fresh cherries, or pack them for dessert on-the-go.

Servings: About 12 cupcakes
Total time: ~1 hour 30 minutes (including chilling time)

Ingredients

For the crust:

  • 1 1/4 cups graham cracker crumbs (about 9–10 full crackers)
  • 3 tablespoons granulated sugar
  • 4 tablespoons (1/4 cup) unsalted butter, melted

For the cheesecake filling:

  • 16 ounces (2 blocks) cream cheese, room temperature
  • 2/3 cup granulated sugar
  • 2 large eggs, room temperature
  • 1 teaspoon vanilla extract
  • 1/3 cup sour cream (or plain Greek yogurt for a tangy swap)
  • 1 tablespoon all-purpose flour (helps stabilize the cupcakes)

For the cherry topping:

  • 1 cup cherry pie filling (store-bought for convenience) or
  • 1 cup fresh or frozen cherries + 2 tablespoons sugar + 1 teaspoon lemon juice, cooked down slightly

Optional garnish:

  • Whipped cream
  • Fresh cherries or maraschino cherries
  • Lemon zest

Equipment you’ll use

  • Standard 12-cup muffin tin
  • Cupcake liners (or lightly grease the tin)
  • Mixing bowls and a hand or stand mixer
  • Rubber spatula
  • Measuring cups and spoons

Simple Directions (Step-by-step)

  1. Prep the pan and preheat

    • Preheat the oven to 325°F (163°C). Line a 12-cup muffin tin with liners (I like sturdier liners so bottoms don’t stick). Let your cream cheese and eggs come to room temperature while you prep—the smoother the batter, the happier the cupcakes.
  2. Make the graham crust

    • In a small bowl, combine graham cracker crumbs, sugar, and melted butter. Stir until crumbs look like wet sand.
    • Spoon about 1 tablespoon of the crumb mixture into each liner and press gently to form an even base. A shot glass or the back of a spoon works great for packing.
  3. Whip the cheesecake filling

    • In a medium bowl, beat the room-temperature cream cheese on medium speed until smooth and creamy — no lumps. Scrape down the sides as needed.
    • Add sugar and beat until well blended.
    • Mix in one egg at a time, blending just until combined after each. Stir in vanilla, sour cream, and flour. Overbeating introduces air and can cause cracks, so keep the mixer gentle and steady.
  4. Fill and bake

    • Divide the filling evenly among the 12 liners, filling about 3/4 full. They’ll puff slightly but settle as they cool.
    • Bake at 325°F for 18–22 minutes. The edges should be set while the centers have a slight jiggle — like a well-made pudding.
  5. Chill and top

    • Let the cupcakes cool to room temperature on a wire rack for about 30 minutes, then chill in the refrigerator for at least 2 hours, preferably overnight. This helps them set firmly and slice neatly.
    • When ready to serve, spoon cherry pie filling on each cupcake or top with your quick homemade cherry reduction.
  6. Serve

    • Add a dollop of whipped cream and a fresh cherry if you’re feeling fancy. These cupcakes are best the day they’re chilled, but they keep well for a couple of days in an airtight container.

A Few Notes About Timing and Texture

  • If you’re prepping for a party, make them the day before. The chilling time lets flavors deepen and makes for cleaner presentation.
  • The cupcakes are meant to be creamy, not fully firm like a baked cheesecake. A slight wobble in the center is normal.

Quick Homemade Cherry Topping (if using fresh/frozen)

  • In a small saucepan, combine 1 cup cherries (pitted), 2 tablespoons sugar, and 1 teaspoon lemon juice. Cook over medium heat until cherries break down and sauce thickens, about 8–10 minutes. Cool before spooning onto cupcakes.

Cooking Tips (so your cupcakes look and taste like you meant it to be this way)

  • Room temperature is your friend: Let cream cheese and eggs sit out for 30–60 minutes. Cold ingredients create lumps and a grainy texture.
  • Don’t overmix: Beat until just combined. Too much air equals cracks and shrinking.
  • If cracks worry you: Bake at a slightly lower temp (320°F) and don’t overbake. A gentle water bath isn’t necessary for cupcakes, but if you’re nervous, place a shallow pan of hot water on the bottom rack to add moisture in the oven.
  • Press crust gently: Too compact and the base becomes dense; too loose and it falls apart. Aim for firm but not crushed.
  • Use a cookie scoop: It guarantees even portions of filling and a uniform bake.

Personal Anecdote (because food is memory)
This recipe became my little kitchen secret when my sister Patricia and I hosted a neighborhood bake-off — she tried them, inhaled one, and confessed she’d been dreaming about them the next day. They were the first dessert my kids requested for a sleepover, and watching a group of teens quietly eat tiny cheesecakes made me realize simple desserts can create big, quiet moments of joy.

Variations & Swaps (keep it fun)

  • Lemon Cherry: Add 1 teaspoon lemon zest to the batter and swap sour cream for lemon yogurt.
  • Chocolate Crust: Use crushed chocolate cookies instead of graham crackers for a brownie-ish base.
  • Mini Bites: For parties, use a mini muffin tin to make bite-sized mini cheesecake cupcakes; reduce bake time to 12–15 minutes.
  • Fruit swaps: Substitute the cherry topping with blueberry, raspberry, or a warm apple compote.

FAQs

Q: Can I use low-fat cream cheese or Greek yogurt in the batter?
A: Yes. Low-fat cream cheese will work, though texture is slightly less decadent. Greek yogurt can replace sour cream for a tangier bite.

Q: Can I freeze these?
A: You can freeze the unfrosted cupcakes (wrapped tightly) for up to 2 months. Thaw overnight in the fridge and add cherry topping before serving.

Q: How should I store leftovers?
A: Keep them in an airtight container in the refrigerator for up to 3 days. If you need them longer, freeze as noted above.

Q: Can I make these dairy-free?
A: Use a vegan cream cheese and a dairy-free sour cream alternative. Baking times are similar, but flavors may be a touch different.

Q: My cupcakes cracked — what happened?
A: Cracking usually means the oven temp was a bit high or the batter was overmixed. Lower the temp slightly and mix gently next time.

Pairing Suggestions
These cupcakes shine with a morning coffee or a late-afternoon tea. For a dessert spread, pair them with a light sparkling wine or a simple iced tea with lemon. If you love dessert boards, they sit nicely beside fruit tarts and a tray of chocolate-dipped strawberries.

Want more cheesecake-style treats? If you like the creamy, handheld dessert vibe, I also have a fun riff on strawberry cheesecake bites that pairs a crunchy crumble with soft filling — perfect when you want texture contrast: bites of strawberry cheesecake with crunchy crumble.

A Final Cooking Pep Talk
Baking doesn’t have to be perfect to be wonderful. These Cherry Cheesecake Cupcakes are forgiving, delightful, and sincere — like a sincere compliment from a friend. If your first batch isn’t magazine-perfect, that’s okay. Your family will still eat them, and that’s what really counts. Plus, practice is delicious.

Conclusion

If you’re craving a dessert that balances ease with a bit of “wow,” these Cherry Cheesecake Cupcakes are a go-to. For inspiration on different cherry toppings and presentation ideas, check out this charming take on the classic: Cherry Cheesecake Cupcakes – A Pretty Life In The Suburbs. For a slightly different method and helpful technique pictures, this resource is a great companion as you try the recipe at home: Cherry Cheesecake Cupcakes – My Baking Addiction.

Happy baking — grab your mixer, loosen your apron, and remember: sweetness is meant to be shared.

Cherry cheesecake cupcakes topped with fresh cherries and cream cheese frosting

Cherry Cheesecake Cupcakes

Deliciously creamy mini cheesecakes topped with cherry pie filling, perfect for any occasion.
Prep Time 30 minutes
Cook Time 22 minutes
Total Time 1 hour 30 minutes
Servings: 12 cupcakes
Course: Dessert
Cuisine: American
Calories: 200

Ingredients
  

For the crust
  • 1.25 cups 1 1/4 cups graham cracker crumbs (about 9–10 full crackers)
  • 3 tablespoons 3 tablespoons granulated sugar
  • 4 tablespoons 4 tablespoons (1/4 cup) unsalted butter, melted
For the cheesecake filling
  • 16 ounces 16 ounces (2 blocks) cream cheese, room temperature
  • 2/3 cup 2/3 cup granulated sugar
  • 2 large 2 large eggs, room temperature
  • 1 teaspoon 1 teaspoon vanilla extract
  • 1/3 cup 1/3 cup sour cream (or plain Greek yogurt for a tangy swap)
  • 1 tablespoon 1 tablespoon all-purpose flour helps stabilize the cupcakes
For the cherry topping
  • 1 cup 1 cup cherry pie filling (store-bought for convenience) or 1 cup fresh or frozen cherries + 2 tablespoons sugar + 1 teaspoon lemon juice, cooked down slightly
Optional garnish
  • Whipped cream
  • Fresh cherries or maraschino cherries
  • Lemon zest

Method
 

Preparation
  1. Preheat the oven to 325°F (163°C). Line a 12-cup muffin tin with liners.
  2. Let your cream cheese and eggs come to room temperature while you prep.
Make the graham crust
  1. In a small bowl, combine graham cracker crumbs, sugar, and melted butter. Stir until crumbs look like wet sand.
  2. Spoon about 1 tablespoon of the crumb mixture into each liner and press gently to form an even base.
Whip the cheesecake filling
  1. In a medium bowl, beat the room-temperature cream cheese on medium speed until smooth and creamy — no lumps.
  2. Add sugar and beat until well blended.
  3. Mix in one egg at a time, blending just until combined after each. Stir in vanilla, sour cream, and flour.
Fill and bake
  1. Divide the filling evenly among the 12 liners, filling about 3/4 full.
  2. Bake at 325°F for 18–22 minutes. The edges should be set while the centers have a slight jiggle.
Chill and top
  1. Let the cupcakes cool to room temperature on a wire rack for about 30 minutes, then chill in the refrigerator for at least 2 hours, preferably overnight.
  2. When ready to serve, spoon cherry pie filling on each cupcake or top with cherry reduction.
Serve
  1. Add a dollop of whipped cream and a fresh cherry if you’re feeling fancy.

Notes

The cupcakes are meant to be creamy. A slight wobble in the center is normal. Feel free to experiment with different toppings.

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